Analytical and Translational Genomics (ATG) Shared Resource

Overview of Services

 KUGR personnel

 

The Analytical and Translational Genomics Resource primarily provides next generation sequencing technologies such as RNA-seq, targeted gene panel sequencing, exome sequencing and epigenetics assays such as ChIP-seq and RRBS, coupled with expert bioinformatics analysis. Affymetrix microarray and real-time PCR services are also available. The ATG Shared Resource is available for use by all faculty at UNM and its affiliates, and all investigators are encouraged to contact us to find out how we can help with their research.

  

Ion S5XL Next-Generation Sequencing: The powerful Life Technologies Ion S5XL semiconductor sequencing instrument is ideal for next-generation sequencing assays including exome sequencing (all the proton-coding exons, about 2% of the genome), gene expression (RNA-seq) assays, epigenetics assays (ChIP-seq) and targeted sequencing (Ion Ampliseq Comprehensive Cancer Panel) of cancer-relevant genes, even from FFPE samples.

 

Expert Bioinformatics Data Analysis: ATG Shared Resource staff use sophisticated data analysis methods to analyze gene expression and genotyping data and strive to provide our users with publication-quality figures for their manuscripts or grant applications. We use R/Bioconductor and commercial software packages to explore the large and complicated data sets generated by genomics methods.

 

10X Genomics Single Cell: The ATG shared resource has a complete 10X Genomics Chromium Controller that allows users to bring ATG Single Cell Suspensions and Single Cell Libraries are produced. There are several assays available through 10X genomics that ATG is able to provide to our users. 

 

 

Leadership

 

Scott A. Ness, PhD
Professor, Internal Medicine: Molecular Medicine

Associate Director, UNM Cancer Center

Office: CRF 121A; Tel: (505) 272-9883

 

 

Location and hours of operation

Hours Location

Monday - Friday

8:00 AM - 5 PM

Cancer Research Facility

Rooms: 118, and 124

Links and Resources

  1. UNM Genomics Web Page
  2. ATG Shared Resource Web Page

Fixed Cost Services


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10X Genomics (Single Cell) (1)
Data Analysis (2)
Illumina Sequencing (4)
Instrument Annual Fee (3)
Ion Proton (2)
Lab Services (4)